I am curious what made you decide to only run the circulator on the filter when you are burning. I have been running mine 24/7 since I put the filter on after the first cracked weld leak. I guess I should redo that statement to say 24/7 when it wasn't down for the second leak repair. I do think it helps stratifies the tank temp. I do have my circulator switch mounted on the control panel for the timer so I could change it to burn only very easy.
I bought my Garn 2000 used (9 years ). I heated the unit up to 130 (on the controller) to check for leaks (before finishing enclosure), I used an infrared thermometer to see the temperature variation from the bottom of the tank. bottom of unit was 80 or 90 degrees when top of tank is 130.
Since I don't heat domestic hot water, and I run my system completely open (no heat exchanger) I can run lower temp water through my baseboard utilizing Tekmar 256 outdoor reset. It really helps get more mileage out of a fire in the shoulder seasons. If air temp is 45, Tekmar may only call for mixing temp 110-115 degrees. I can go 2 or 2.5 days between full load of wood. My circulators run almost continuously and the house is more comfortable because you don't get those temp spikes with 180 or 190 degree water running through baseboard. The whole house just feels warm, not hot/cold as system cycles on and off.
Since heat rises, it just made sense not to continuously mix the cold water (bottom of tank) to the top 1/3 where my system pulls the heat from. (I piped mine with the supply from the top of tank. )
Depending on how complex the filter piping circuit is, the pump probably does 10-15 gpm through the filter, If you have a 2 hour burn time, that is 1200 of the 2000 gallon tank. Every other day the entire system goes through the filter. My system inside is piped with close t's so the oil boiler sits cold. I also have BoilerMag magnetic filter installed on the heating circut, so if either zone is calling it passes through it. After a year of running there was just a little residue in the BoilerMag.
I think eliminating the adnode rods, following the new installation manual with electrical isolation, dielectric unions, etc and biannual water testing eliminates the corrosion factor. (I'm only 3 years in with a 13 year old garn. )
I do run the filter circuit for a week before I fire the boiler for the season, just so I can get a good water sample for Precision Chem.
After first heating season I had to open manway cover to add more chemicals I looked inside with a LED spotlight and everything looked the same as it did since I filled it.