It's supposed to keep stack temp hot enough to keep a natural draft ''flowing,'' and keep the boiler from hitting the bottom of the differential longer. Keeps the draft fan off until needed at low temp setting. The unit takes place of the aquastat as well.I dunno what this Boiler Commander does exactly, but if it just monitors and controls the stack temp, that can be done easily with an Auber PID temp controller and a thermocouple...maybe $60-80 worth of parts
Universal 1/16 DIN PID Temperature Controller [SYL-2362] - $41.25 : Auber Instruments, Inc., Temperature control solutions for home and industry
Auber Instruments, Inc. Universal 1/16 DIN PID Temperature Controller [SYL-2362] - This temperature controller offers great value for its price as it is accurate, smart, reliable and equipped with more features than most controllers on the market (not just the similarly priced units). It is the...www.auberins.com
There's a guy on youtube who made his own as well, although he used an Ink bird controller for the stack temp. I'll see if I can find the vid and I'll share it here.
@cumminstinkerer and @jblnut most likely will have a bit more clearer info than I.